Visualization/Display

The following modules provide specialized displays for Tripal content types.

Analyzed Phenotypes

This module provides support and visualization for partially analyzed data stored in a modified GMOD Chado schema. It is meant to support large scale phenotypic data through backwards compatible improvements to the Chado schema including the addition of a project and stock foreign key to the existing phenotype table, optimized queries and well-chosen indexes.

Documentation Repository

CvitEmbed

This module integrates CViTjs with Tripal to provide whole-genome visualizations. It creates one page per plot and makes them accessible via the Drupal Navigation menu.

Documentation Repository

Mainlab Tripal Data Display

Mainlab Tripal Data Display contains a set of Drupal/PHP templates that organize and extend the default display of the biological data hosted on a Tripal-enabled site (i.e. http://tripal.info). Supported data type includes organism, marker, QTL, germplasm (stock), map (featuremap), project, heritable phenotypic marker (MTL), environment (ND geolocation), haplotype block, polymorphism, eimage, generic gene (genes created by parsing Genbank files using the Mainlab `tripal_genbank_parser module), feature, and pub. Each of the templates can be turned on/off as desired.

Documentation Repository

ND Genotypes

This module provides support and visualization of genotypic data stored in a modified GMOD Chado schema. The 3.x branch of this module represents a shift towards support for large scale genotypic datasets through backwards compatible improvements to the Chado schema including a new gathering table for genotypes (genotype_call) modeled after the Chado phenotype table, optimized queries and well-chosen indexes.

Documentation Repository

Tripal Fancy Fields

This module provides additional fields for use with Tripal 3. The current version provides a single-series chart field that can be displayed as a pie, donut, or bar chart, as well as, a simple table.

Documentation Repository